Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKJ00924.1Hydroxymethylpyrimidine ABC transporter, substrate-binding component. (323 aa)    
Predicted Functional Partners:
AKI99618.1
ABC-type sulfate transporter, permease protein.
 
 
 0.885
AKJ03541.1
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
 
 
 0.845
AKI99619.1
ABC-type sulfate transporter, ATPase component.
 
 
 0.843
AKJ03542.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 0.837
AKJ00923.1
Sensory box histidine kinase.
       0.773
AKJ00922.1
Geranylgeranyl reductase.
       0.625
AKJ02739.1
Alkanal monooxygenase alpha chain.
  
  
 0.539
AKJ00486.1
Nitrogen regulatory protein P-II.
   
 
 0.524
AKI99617.1
ABC-type sulfate transporter, periplasmic binding protein.
  
   
 0.516
rlmN
Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
       0.507
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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