STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00924.1Hydroxymethylpyrimidine ABC transporter, substrate-binding component. (323 aa)    
Predicted Functional Partners:
AKI99618.1
ABC-type sulfate transporter, permease protein.
 
  
 0.800
AKJ00923.1
Sensory box histidine kinase.
       0.773
AKI99619.1
ABC-type sulfate transporter, ATPase component.
  
 0.749
AKJ03542.1
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
  
 0.739
AKJ03541.1
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
 
  
 0.731
AKJ00922.1
Geranylgeranyl reductase.
       0.625
AKI99617.1
ABC-type sulfate transporter, periplasmic binding protein.
  
     0.508
rlmN
Ribosomal RNA large subunit methyltransferase N; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
       0.507
AKJ02739.1
Alkanal monooxygenase alpha chain.
  
  
 0.505
AKI98733.1
NADPH-dependent FMN reductase.
  
  
 0.437
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.