Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00931.1Hypothetical protein. (205 aa)    
Predicted Functional Partners:
AKJ00932.1
Cys-tRNA(Pro) deacylase YbaK.
       0.773
AKJ03082.1
Hypothetical protein.
  
     0.545
AKJ07058.1
Hypothetical protein.
  
     0.501
AKJ08353.1
Nicotinamidase.
 
     0.494
AKI98778.1
Hypothetical protein.
  
     0.468
AKJ04228.1
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
  
     0.462
AKI99483.1
Hypothetical protein.
  
     0.461
AKJ04887.1
Hypothetical protein.
 
    0.461
AKI99912.1
Myosin heavy chain.
  
     0.460
AKJ00933.1
Choline dehydrogenase.
       0.447
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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