STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00932.1Cys-tRNA(Pro) deacylase YbaK. (258 aa)    
Predicted Functional Partners:
AKJ06501.1
Autolysin sensor kinase.
 
 
 0.913
AKJ00957.1
Sensor histidine kinase.
 
 
 0.911
AKJ00931.1
Hypothetical protein.
       0.773
AKJ00933.1
Choline dehydrogenase.
       0.447
AKI99481.1
Putative membrane protein.
   
    0.412
AKJ00605.1
Transglycosylase associated protein.
   
    0.412
AKJ00892.1
Putative membrane protein.
   
    0.412
AKJ04378.1
Sensor protein degS.
  
  
 0.402
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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