Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ00933.1Choline dehydrogenase. (1155 aa)    
Predicted Functional Partners:
AKJ01754.1
Cholesterol oxidase.
 
  
0.859
AKJ00934.1
Hypothetical protein.
 
    0.747
AKJ03602.1
Phosphodiesterase/alkaline phosphatase D-like protein.
 
      0.678
AKJ03289.1
Cell surface protein.
  
     0.526
AKJ03456.1
Hypothetical protein.
  
     0.522
AKJ03458.1
Hypothetical protein.
  
     0.500
AKI99995.1
Hypothetical protein.
  
 
 0.481
AKJ06157.1
Hypothetical protein.
  
     0.473
AKJ02806.1
Malonyl CoA-acyl carrier protein transacylase.
 
   
 0.469
AKJ02809.1
Malonyl CoA-acyl carrier protein transacylase.
 
   
 0.469
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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