STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00939.1Phosphoesterase protein. (217 aa)    
Predicted Functional Partners:
AKJ00940.1
Helicase domain protein.
 
    0.955
AKJ00942.1
ATP-dependent DNA ligase.
 
   
 0.833
AKJ00945.1
mRNA 3-end processing factor.
 
     0.791
AKJ06932.1
mRNA 3-end processing factor.
 
     0.790
AKJ01039.1
ATP-dependent DNA ligase.
 
   
 0.602
AKJ00941.1
Hypothetical protein.
       0.564
AKJ00429.1
Putative ATP-dependent DNA helicase.
 
    0.446
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.