Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKI99283.1 | AKJ00942.1 | AA314_00910 | AA314_02568 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | ATP-dependent DNA ligase. | 0.855 |
AKI99283.1 | AKJ05181.1 | AA314_00910 | AA314_06807 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA ligase. | 0.855 |
AKI99283.1 | AKJ05258.1 | AA314_00910 | AA314_06884 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase X family. | 0.686 |
AKI99283.1 | polA | AA314_00910 | AA314_06530 | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.996 |
AKJ00939.1 | AKJ00940.1 | AA314_02565 | AA314_02566 | Phosphoesterase protein. | Helicase domain protein. | 0.955 |
AKJ00939.1 | AKJ00942.1 | AA314_02565 | AA314_02568 | Phosphoesterase protein. | ATP-dependent DNA ligase. | 0.833 |
AKJ00939.1 | AKJ00945.1 | AA314_02565 | AA314_02571 | Phosphoesterase protein. | mRNA 3-end processing factor. | 0.791 |
AKJ00939.1 | AKJ06932.1 | AA314_02565 | AA314_08558 | Phosphoesterase protein. | mRNA 3-end processing factor. | 0.790 |
AKJ00940.1 | AKJ00939.1 | AA314_02566 | AA314_02565 | Helicase domain protein. | Phosphoesterase protein. | 0.955 |
AKJ00940.1 | AKJ00942.1 | AA314_02566 | AA314_02568 | Helicase domain protein. | ATP-dependent DNA ligase. | 0.796 |
AKJ00940.1 | AKJ00945.1 | AA314_02566 | AA314_02571 | Helicase domain protein. | mRNA 3-end processing factor. | 0.793 |
AKJ00940.1 | AKJ06932.1 | AA314_02566 | AA314_08558 | Helicase domain protein. | mRNA 3-end processing factor. | 0.791 |
AKJ00942.1 | AKI99283.1 | AA314_02568 | AA314_00910 | ATP-dependent DNA ligase. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.855 |
AKJ00942.1 | AKJ00939.1 | AA314_02568 | AA314_02565 | ATP-dependent DNA ligase. | Phosphoesterase protein. | 0.833 |
AKJ00942.1 | AKJ00940.1 | AA314_02568 | AA314_02566 | ATP-dependent DNA ligase. | Helicase domain protein. | 0.796 |
AKJ00942.1 | AKJ00945.1 | AA314_02568 | AA314_02571 | ATP-dependent DNA ligase. | mRNA 3-end processing factor. | 0.966 |
AKJ00942.1 | AKJ05181.1 | AA314_02568 | AA314_06807 | ATP-dependent DNA ligase. | DNA ligase. | 0.900 |
AKJ00942.1 | AKJ05258.1 | AA314_02568 | AA314_06884 | ATP-dependent DNA ligase. | DNA polymerase X family. | 0.739 |
AKJ00942.1 | AKJ06932.1 | AA314_02568 | AA314_08558 | ATP-dependent DNA ligase. | mRNA 3-end processing factor. | 0.979 |
AKJ00942.1 | ligA | AA314_02568 | AA314_01210 | ATP-dependent DNA ligase. | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.908 |
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