Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AKJ00945.1mRNA 3-end processing factor. (341 aa)    
Predicted Functional Partners:
AKJ00942.1
ATP-dependent DNA ligase.
 
 0.966
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.820
AKJ00940.1
Helicase domain protein.
 
    0.794
AKJ01039.1
ATP-dependent DNA ligase.
 
 
 0.794
AKJ00939.1
Phosphoesterase protein.
 
     0.793
AKJ07976.1
Hypothetical protein.
   
 0.787
AKI99455.1
ATP-dependent DNA ligase.
 
 
 0.631
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.624
AKJ07680.1
Chalcone synthase.
    
 0.586
AKJ07694.1
Transferase.
    
 0.586
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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