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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00954.1General secretion pathway protein F. (390 aa)    
Predicted Functional Partners:
AKJ05719.1
General secretion pathway protein F.
  
  
 
0.929
AKJ05476.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.927
AKJ05718.1
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.927
AKJ06665.1
Type IV fimbrial assembly, ATPase PilB.
 
 
 0.927
AKJ04507.1
General secretion pathway protein E.
 
 
 0.916
AKJ08393.1
Type IV fimbrial assembly, ATPase PilB.
 
 
 0.916
AKJ02668.1
Type IV fimbrial assembly, ATPase PilB.
 
 
 0.911
AKJ06656.1
Leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.896
AKJ00195.1
Type IV fimbrial assembly, ATPase PilB.
 
 
 0.892
AKJ07965.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.887
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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