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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00983.1Hypothetical protein. (214 aa)    
Predicted Functional Partners:
AKJ00982.1
Cytoplasmic alpha-amylase.
       0.697
AKI98425.1
Hypothetical protein.
  
  
 0.528
AKJ04343.1
Beta-propeller domains of methanol dehydrogenase type.
  
  
 0.528
AKJ04775.1
Beta-propeller domains of methanol dehydrogenase type.
  
  
 0.528
AKJ00984.1
Hypothetical protein.
       0.515
AKJ06347.1
ABC transporter, permease protein.
  
     0.478
AKI98537.1
Primosomal protein N.
  
  
 0.460
AKI99790.1
Translation initiation factor 2.
  
  
 0.460
AKJ00801.1
Hypothetical protein.
  
  
 0.460
AKJ02411.1
Sporulation domain protein.
  
  
 0.460
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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