Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00992.1Integral membrane protein. (284 aa)    
Predicted Functional Partners:
AKI99960.1
Putative fatty acid desaturase.
  
     0.542
AKJ00993.1
Glutamine amidotransferase class-I.
       0.515
AKJ00994.1
Hypothetical protein.
       0.502
AKJ03917.1
Hypothetical protein.
  
     0.466
AKJ07698.1
Hypothetical protein.
  
     0.464
AKJ00991.1
Nitric-oxide reductase.
       0.458
AKI99982.1
Internalin, putative.
  
     0.457
AKJ02425.1
Hypothetical protein.
  
     0.453
AKJ02222.1
Permease of the drug/metabolite transporter.
  
     0.424
AKJ01534.1
O-methyltransferase, family 2.
 
     0.421
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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