Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKJ01016.1Hypothetical protein. (845 aa)    
Predicted Functional Partners:
hutH
Histidine ammonia-lyase.
  
  
 0.705
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.698
AKJ01017.1
Hypothetical protein.
       0.664
AKJ00251.1
Amidohydrolase precursor.
  
     0.609
AKJ04344.1
Microsomal dipeptidase.
 
     0.581
AKJ08020.1
Amidohydrolase precursor.
  
     0.580
AKJ04437.1
Microsomal dipeptidase.
 
     0.578
AKJ00603.1
Aminopeptidase.
  
     0.556
AKI99020.1
tolB protein precursor protein.
  
     0.526
AKJ03055.1
Renal dipeptidase family protein.
 
     0.507
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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