Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01099.1Kinesin light chain. (1460 aa)    
Predicted Functional Partners:
AKJ01100.1
MoxR-like ATPase.
 
     0.918
AKJ04471.1
Hypothetical protein.
  
    0.769
AKJ03983.1
Hypothetical protein.
  
     0.766
AKJ01101.1
Hypothetical protein.
       0.746
AKJ00537.1
TPR repeat protein.
  
     0.744
AKJ01798.1
High-affnity carbon uptake protein Hat/HatR.
  
 
  0.678
AKJ05112.1
High-affnity carbon uptake protein Hat/HatR.
  
 
  0.676
AKJ06241.1
High-affnity carbon uptake protein Hat/HatR.
  
 
  0.675
AKI98916.1
MoxR-like ATPase.
  
     0.660
AKJ01749.1
TPR repeat protein.
  
     0.656
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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