Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01115.1Hypothetical protein. (131 aa)    
Predicted Functional Partners:
AKJ01107.1
Hypothetical protein.
       0.773
AKJ01108.1
Beta-glucosidase.
       0.773
AKJ01109.1
ABC transporter, ATP-binding component 2; Belongs to the ABC transporter superfamily.
       0.773
AKJ01110.1
Peptide ABC transporter, ATP-binding protein.
       0.773
AKJ01111.1
ABC transporter, permease component 1.
       0.773
AKJ01112.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA.
       0.773
AKJ01113.1
Endo-1,4-beta-xylanase A precursor.
       0.773
AKJ01114.1
Putative ROK-family transcriptional regulator.
       0.773
AKJ01106.1
Putative lipoprotein.
       0.697
AKJ01105.1
Putative lipoprotein.
       0.649
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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