Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01134.1Trehalose synthase. (1070 aa)    
Predicted Functional Partners:
AKJ01278.1
Ferric siderophore transport system, periplasmic binding protein TonB.
 
 
 0.846
AKJ04850.1
Ferric siderophore transport system, periplasmic binding protein TonB.
 
 
 0.820
AKJ04075.1
Hypothetical protein.
  
    0.776
AKJ07549.1
Hypothetical protein.
  
    0.772
AKJ02042.1
RTX toxin.
  
     0.764
AKI99949.1
Hypothetical protein.
  
     0.745
AKI99287.1
Hypothetical protein.
  
     0.740
AKI99817.1
Hypothetical protein.
  
     0.737
AKJ00817.1
Putative serine/threonine-protein kinase pknL.
  
     0.727
AKJ02201.1
Hypothetical protein.
  
     0.700
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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