STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01150.1HAMP domain protein. (171 aa)    
Predicted Functional Partners:
AKI99786.1
Chemotaxis protein methyltransferase CheR.
  
 
 0.674
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.668
AKJ02009.1
Signal transduction histidine kinase CheA.
  
 
 0.636
AKJ05979.1
Signal transduction histidine kinase CheA.
  
 
 0.636
AKJ07081.1
Signal transduction histidine kinase CheA.
  
 
 0.636
AKJ08119.1
Signal transduction histidine kinase CheA.
  
 
 0.636
AKJ01152.1
3-dehydroquinate dehydratase II; Belongs to the type-II 3-dehydroquinase family.
       0.604
AKJ04404.1
Signal transduction histidine kinase CheA.
  
 
 0.596
AKJ05440.1
Signal transduction histidine kinase CheA.
  
 
 0.596
AKJ01153.1
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.592
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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