Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ01167.1Beta-lactamase domain protein. (395 aa)    
Predicted Functional Partners:
AKJ08091.1
Membrane protein.
  
     0.749
AKJ04783.1
Hypothetical protein.
  
     0.704
AKJ01168.1
Serine/threonine protein kinase.
       0.682
AKJ00259.1
Radical SAM family enzyme; Similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB.
   
  
 0.680
AKJ01807.1
Coproporphyrinogen III oxidase, oxygen-independent; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.680
AKJ08362.1
Hypothetical protein.
 
     0.667
AKI99649.1
Transcriptional regulator, TetR family.
  
     0.652
AKJ04477.1
Adenylate cyclase.
  
     0.609
AKI98488.1
Hypothetical protein.
  
  
 0.574
AKI99835.1
Hypothetical protein.
  
  
 0.574
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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