Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKJ01170.1Putative diheme cytochrome c-553. (403 aa)    
Predicted Functional Partners:
AKJ01360.1
CytoChrome c, class I.
  
     0.766
AKJ05279.1
Hypothetical protein.
  
     0.557
AKJ00991.1
Nitric-oxide reductase.
  
  
 0.489
AKJ01501.1
Nitric-oxide reductase.
  
  
 0.489
AKJ01171.1
Exopolyphosphatase.
       0.473
AKI99073.1
Hypothetical protein.
 
    0.472
AKI99156.1
Sulfite oxidase.
 
 
 
 0.454
AKJ05391.1
Internalin, putative.
  
     0.454
AKJ07753.1
Putative lipoprotein.
  
     0.453
AKJ05276.1
Hypothetical protein.
  
     0.452
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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