STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01182.1Response regulator of zinc sigma-54-dependent two-component system. (444 aa)    
Predicted Functional Partners:
AKJ05823.1
Flagellar motor switch protein FliM.
  
 
 0.885
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.765
AKJ04336.1
Flagellar sensor histidine kinase FleS.
  
 0.737
AKJ06427.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
 
 0.674
AKJ02058.1
Flagellar sensor histidine kinase FleS.
  
  0.672
AKJ04611.1
Chemotaxis regulator.
    
  0.669
AKI99177.1
Sensor protein of zinc sigma-54-dependent two-component system.
   
  0.668
AKJ00729.1
Flagellar sensor histidine kinase FleS.
   
  0.668
AKJ00635.1
Flagellar sensor histidine kinase FleS.
   
  0.665
AKJ04613.1
Flagellar sensor histidine kinase FleS.
   
  0.665
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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