STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01193.1DNA repair protein RadA. (741 aa)    
Predicted Functional Partners:
AKJ01192.1
Hypothetical protein.
       0.773
AKJ04546.1
Phytochrome, two-component sensor histidine kinase.
   
 
 0.758
AKJ01194.1
Phytochrome, two-component sensor histidine kinase.
   
   0.719
AKJ01191.1
Glutaryl-CoA dehydrogenase.
       0.496
AKJ01195.1
Hypothetical protein.
       0.449
AKI99839.1
Phytochrome, two-component sensor histidine kinase.
   
 
 0.443
AKJ00124.1
Phytochrome, two-component sensor histidine kinase.
   
 
 0.443
AKJ00042.1
Two-component hybrid sensor and regulator.
 
 
   0.402
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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