STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01223.1Hypothetical protein. (228 aa)    
Predicted Functional Partners:
AKJ01224.1
Hypothetical protein.
       0.675
AKJ01225.1
Putative pilus biogenesis operon protein.
       0.675
AKJ01226.1
Hypothetical protein.
       0.675
AKJ01227.1
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.652
AKJ01228.1
Hypothetical protein.
       0.634
AKJ02684.1
Flp pilus assembly protein RcpC/CpaB.
  
  
 0.579
AKJ02685.1
Flp pilus assembly protein TadB.
  
  
 0.553
AKJ04906.1
Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily.
  
  
 0.506
AKJ02059.1
Hypothetical protein.
  
  
 0.502
AKJ02686.1
Type II/IV secretion system protein TadC, associated with Flp pilus assembly.
  
    0.487
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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