Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ01235.1Outer membrane protein A precursor. (562 aa)    
Predicted Functional Partners:
AKJ04614.1
Outer membrane protein A precursor.
  
     0.733
AKJ06767.1
Flagellar motor rotation protein MotB.
  
 
 0.714
AKJ07964.1
Ferric siderophore transport system, biopolymer transport protein ExbB.
 
   
 0.549
AKJ01236.1
Hypothetical protein.
       0.521
AKJ03669.1
Hypothetical protein.
 
 
 0.461
AKJ05038.1
Ferric siderophore transport system, biopolymer transport protein ExbB.
 
   
 0.454
AKJ07517.1
MotA/TolQ/ExbB proton channel family protein.
 
   
 0.454
AKJ01237.1
Hypothetical protein.
       0.446
AKJ01277.1
MotA/TolQ/ExbB proton channel family protein.
 
   
 0.437
AKJ05112.1
High-affnity carbon uptake protein Hat/HatR.
  
   0.437
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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