Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01243.1Hypothetical protein. (1157 aa)    
Predicted Functional Partners:
AKJ01255.1
TolA protein.
 
 
   0.800
AKJ02161.1
Plectin 1 isoform 8.
  
 
   0.788
AKJ06212.1
Hypothetical protein.
  
 
   0.782
AKJ07382.1
Exonuclease SbcC.
  
   0.780
AKJ05146.1
DNA gyrase subunit B.
  
 
   0.778
AKJ07823.1
Cna B domain protein.
  
   0.778
AKJ00466.1
RTX toxin.
  
     0.775
AKJ02846.1
Flagellar motor protein.
  
     0.775
AKJ02914.1
Hypothetical protein.
  
     0.775
AKI98397.1
Hypothetical protein.
  
     0.774
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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