Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01255.1TolA protein. (1523 aa)    
Predicted Functional Partners:
AKI99850.1
DNA topoisomerase III.
  
 
 0.882
AKJ05086.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.868
AKJ05146.1
DNA gyrase subunit B.
 
 0.825
AKJ02410.1
TPR domain protein, putative component of TonB system.
 
 0.801
AKJ01243.1
Hypothetical protein.
 
 
   0.800
AKJ00172.1
Deacetylase.
   
 0.796
AKJ01070.1
Deacetylase.
   
 0.796
AKJ02846.1
Flagellar motor protein.
 
 
   0.796
AKJ06918.1
Acetylspermidine deacetylase.
   
 0.796
AKJ00466.1
RTX toxin.
 
 
   0.787
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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