STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01286.123S rRNA (guanine-N-2-) -methyltransferase rlmL; Belongs to the methyltransferase superfamily. (412 aa)    
Predicted Functional Partners:
AKJ06320.1
23S rRNA (guanine-N-2-) -methyltransferase rlmL; Belongs to the methyltransferase superfamily.
  
 0.940
AKJ02081.1
Hypothetical protein; Belongs to the methyltransferase superfamily.
 
  
 0.703
AKJ01287.1
Antibiotic biosynthesis monooxygenase family protein.
       0.701
AKJ03072.1
LSU m5C1962 methyltransferase RlmI.
 
  
 0.695
AKJ00073.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.583
AKJ05615.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.580
argS
Arginyl-tRNA synthetase.
 
    0.560
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.538
rimP
Transcription termination protein NusA-like protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family.
 
    0.528
birA
Biotin-protein ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.521
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.