STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01404.1Transcriptional regulator, AraC family. (371 aa)    
Predicted Functional Partners:
AKJ01406.1
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
       0.770
AKJ01405.1
Hypothetical protein.
       0.762
AKJ01243.1
Hypothetical protein.
  
   0.611
AKJ02846.1
Flagellar motor protein.
  
   0.546
AKJ00466.1
RTX toxin.
  
   0.544
AKJ06930.1
Hypothetical protein.
  
     0.499
AKJ01407.1
Thioesterase family protein.
       0.482
AKI99949.1
Hypothetical protein.
  
     0.463
AKJ01205.1
TolA protein.
  
     0.446
AKJ07382.1
Exonuclease SbcC.
  
     0.446
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.