Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01431.1Hypothetical protein. (299 aa)    
Predicted Functional Partners:
AKJ01432.1
UDP-glucose 4-epimerase.
  
    0.595
AKJ01488.1
Putative acetyltransferase.
  
   
 0.556
AKJ07503.1
Putative polyvinyl-alcohol dehydrogenase.
  
    0.479
AKJ08000.1
Hypothetical protein.
  
     0.428
AKJ01430.1
Phosphoserine phosphatase.
       0.427
AKJ01370.1
Hypothetical protein.
  
     0.417
AKJ01428.1
Long-chain-fatty-acid CoA ligase.
  
    0.411
AKJ01429.1
Transcriptional regulator.
       0.410
AKJ01427.1
Dihydroflavonol-4-reductase.
  
    0.403
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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