Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01445.1ABC transporter, ATP-binding protein. (1151 aa)    
Predicted Functional Partners:
AKJ03919.1
Gliding motility protein GldF.
 
 
 0.858
AKJ02396.1
Gliding motility protein GldF.
 
 
 0.855
AKJ07363.1
Putative membrane spanning protein.
 
 
 0.855
AKJ03918.1
Gliding motility protein GldG.
 
   
 0.783
AKJ01446.1
Hypothetical protein.
       0.773
AKJ01444.1
Cell division inhibitor.
     
 0.740
AKJ01443.1
TsaC protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.539
AKJ02394.1
Putative lipoprotein.
 
     0.462
AKI98409.1
Membrane protein.
  
 
 0.429
AKI99972.1
Membrane protein.
  
 
 0.429
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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