STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01465.1Hypothetical protein. (421 aa)    
Predicted Functional Partners:
AKJ07887.1
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
 
  
 0.925
AKJ06839.1
Putative ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.918
AKJ07885.1
N-succinyl-L,L-diaminopimelate desuccinylase.
 
  
 0.915
AKJ03739.1
Aspartate aminotransferase.
  
  
 
0.907
argD
Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.907
AKJ03067.1
Hypothetical protein.
  
     0.749
AKJ00217.1
Hypothetical protein.
  
     0.693
AKJ02151.1
Xanthine-guanine phosphoribosyltransferase.
 
   
 0.641
AKJ01467.1
Polyhydroxyalkanoic acid synthase.
       0.593
AKI99860.1
Aspartate aminotransferase.
  
     0.589
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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