Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01527.1Hypothetical protein. (139 aa)    
Predicted Functional Partners:
AKJ01526.1
Putative integral membrane protein.
  
    0.610
AKJ01525.1
Hypothetical protein.
       0.557
AKJ04831.1
Uroporphyrinogen-III methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.551
AKJ01770.1
Respiratory nitrate reductase gamma chain.
  
  
 0.529
AKJ01528.1
Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family.
       0.501
AKI99465.1
Radical SAM, Pyruvate-formate lyase-activating enzyme.
   
  
 0.479
AKI99197.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.432
AKJ00821.1
Ferredoxin reductase.
  
 
 0.432
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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