Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01540.1Cell division protein FtsX. (677 aa)    
Predicted Functional Partners:
AKJ01541.1
Hypothetical protein.
 
    
0.847
AKJ01542.1
Hypothetical protein.
   
 
 0.844
AKJ05841.1
Hypothetical protein.
 
 
 
 0.840
AKJ05838.1
ABC transporter, ATP-binding protein.
 
 
 0.756
AKJ07698.1
Hypothetical protein.
 
     0.725
AKJ01715.1
Type IV fimbrial biogenesis protein PilY1.
  
     0.708
AKJ01539.1
C-methyltransferase.
 
     0.706
AKJ07823.1
Cna B domain protein.
  
 
   0.696
AKI99912.1
Myosin heavy chain.
  
     0.678
AKJ00788.1
Outer membrane lipoprotein-sorting protein.
 
 
 
 0.668
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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