STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01549.1Vanillate O-demethylase oxygenase subunit. (332 aa)    
Predicted Functional Partners:
AKI99389.1
Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA.
 
 
 0.893
AKJ08370.1
Flavodoxin reductase.
 
  
 0.754
AKI99388.1
Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB.
  
     0.660
AKJ01548.1
Hypothetical protein.
       0.594
AKI99703.1
4-oxalocrotonate decarboxylase.
 
   
 0.559
AKJ01550.1
Hypothetical protein.
       0.501
AKI99912.1
Myosin heavy chain.
  
     0.482
AKJ01551.1
Hypothetical protein.
       0.472
AKI98665.1
Hypothetical protein.
  
     0.433
AKJ07698.1
Hypothetical protein.
  
     0.433
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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