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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01565.1Muramoyltetrapeptide carboxypeptidase. (303 aa)    
Predicted Functional Partners:
AKJ01566.1
Beta-lactamase class C and other penicillin binding protein.
 
     0.918
AKJ01567.1
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase.
 
   
 0.885
AKJ01568.1
Thioredoxin family protein.
       0.778
AKJ01569.1
Inositol-1-monophosphatase.
       0.723
AKJ00629.1
D-alanyl-D-alanine carboxypeptidase.
 
   
 0.689
tadA
tRNA-specific adenosine-34 deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
      0.681
AKJ04562.1
Hypothetical protein.
  
     0.552
AKJ01564.1
Ribosomal RNA small subunit methyltransferase B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
       0.523
AKI99679.1
D-aminopeptidase dipeptide-binding protein DppA.
 
    0.520
AKJ04258.1
D-alanyl-D-alanine carboxypeptidase.
 
   
 0.510
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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