STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01609.1JmjC domain protein. (275 aa)    
Predicted Functional Partners:
AKJ01608.1
8-amino-7-oxononanoate synthase.
       0.773
rplP
LSU ribosomal protein L16p; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.712
AKJ01610.1
Hypothetical protein.
       0.639
AKJ03408.1
Hypothetical protein.
  
     0.613
AKJ01611.1
Hypothetical protein.
       0.576
AKJ03261.1
Hypothetical protein.
  
     0.532
AKI99025.1
Aminopeptidase.
  
     0.515
AKJ01612.1
Beta-lactamase.
  
    0.446
AKJ00330.1
Hypothetical protein.
  
     0.441
AKJ05538.1
RNA lariat debranching enzyme.
  
     0.436
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.