Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01634.1Cytochrome c, putative. (504 aa)    
Predicted Functional Partners:
AKJ01636.1
Hypothetical protein.
 
    0.871
AKJ01638.1
Hypothetical protein.
 
  
 0.845
AKJ01635.1
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone.
 
   
 0.838
AKJ06751.1
Hypothetical protein.
 
  
 0.785
AKJ04860.1
Hypothetical protein.
 
  
 0.784
AKJ04859.1
Hypothetical protein.
 
    0.779
AKJ06752.1
Hypothetical protein.
 
    0.778
AKJ07760.1
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.762
AKJ04858.1
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone.
 
   
 0.727
AKJ04857.1
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone.
 
   
 0.721
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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