Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01636.1Hypothetical protein. (605 aa)    
Predicted Functional Partners:
AKJ01635.1
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone.
 
     0.893
AKJ01638.1
Hypothetical protein.
 
     0.880
AKJ01634.1
Cytochrome c, putative.
 
    0.871
AKJ04860.1
Hypothetical protein.
 
     0.780
AKJ06751.1
Hypothetical protein.
 
     0.776
AKJ04856.1
Cytochrome c, putative.
 
    0.768
AKJ06755.1
Cytochrome c, putative.
 
    0.749
AKJ02786.1
Isochorismatase.
  
    0.706
AKJ02042.1
RTX toxin.
  
     0.694
AKJ04228.1
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
  
     0.668
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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