Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01638.1Hypothetical protein. (1637 aa)    
Predicted Functional Partners:
AKJ01636.1
Hypothetical protein.
 
     0.880
AKJ01634.1
Cytochrome c, putative.
 
  
 0.845
AKJ04856.1
Cytochrome c, putative.
 
  
 0.786
AKJ04859.1
Hypothetical protein.
 
     0.781
AKJ06752.1
Hypothetical protein.
 
     0.779
AKJ06755.1
Cytochrome c, putative.
 
  
 0.772
AKJ01635.1
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone.
 
   
 0.766
AKJ02042.1
RTX toxin.
  
     0.758
AKJ04228.1
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
  
   
 0.727
AKJ00732.1
Chlorosome protein H.
  
  
 0.714
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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