STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01640.1Transcriptional regulator, TetR family. (223 aa)    
Predicted Functional Partners:
AKJ01641.1
3-oxoadipate CoA-transferase subunit A.
 
     0.829
AKJ01642.1
3-oxoadipate CoA-transferase subunit B.
 
     0.806
AKJ01644.1
Hydroxymethylglutaryl-CoA synthase.
     
 0.691
AKJ01643.1
Alcohol dehydrogenase.
       0.620
AKJ01639.1
Hypothetical protein.
       0.468
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.414
AKJ00785.1
Transcriptional regulator, TetR family.
  
     0.413
AKJ05319.1
Transcriptional regulator, TetR family.
  
     0.408
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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