Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01660.1Aspartate ammonia-lyase. (757 aa)    
Predicted Functional Partners:
AKJ01659.1
Hypothetical protein.
 
    
0.852
AKJ02201.1
Hypothetical protein.
  
     0.720
AKJ04524.1
Hypothetical protein.
  
     0.643
AKJ07985.1
Glutamate synthase [NADPH] large chain.
  
     0.638
AKJ00679.1
Germacradienol/germacrene D synthase.
  
     0.566
AKJ07106.1
Germacradienol synthase.
  
     0.557
AKJ02846.1
Flagellar motor protein.
  
     0.556
AKJ02914.1
Hypothetical protein.
  
     0.538
AKI99115.1
Hypothetical protein.
  
     0.533
AKJ07333.1
Trypsin domain protein; Belongs to the peptidase S1B family.
  
     0.533
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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