Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ01690.1Hypothetical protein. (314 aa)    
Predicted Functional Partners:
AKJ01689.1
Lipid A export ATP-binding/permease protein MsbA.
 
 
 0.939
AKJ01691.1
HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.823
AKJ01531.1
Hypothetical protein.
  
     0.758
AKJ03190.1
DNA gyrase subunit A.
  
    0.755
AKJ04874.1
Lipid A export ATP-binding/permease protein MsbA.
 
 
 0.752
AKJ03528.1
Lipid A export ATP-binding/permease protein MsbA.
 
 
 0.738
AKJ04965.1
Lanthionine biosynthesis cyclase LanC.
  
     0.737
AKJ04095.1
Hypothetical protein.
  
     0.726
AKJ04091.1
Protein ImpG/VasA.
  
    0.712
AKJ07515.1
Microbial collagenase, secreted.
  
     0.699
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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