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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01716.1Hypothetical protein. (399 aa)    
Predicted Functional Partners:
AKJ01717.1
LSU m5C1962 methyltransferase RlmI.
       0.768
AKJ02410.1
TPR domain protein, putative component of TonB system.
 
     0.713
AKJ01603.1
TolA protein.
  
     0.700
AKJ01931.1
TPR domain protein, putative component of TonB system.
  
     0.697
AKJ02404.1
TPR domain protein, putative component of TonB system.
  
     0.636
AKJ00687.1
Cell division protein FtsK.
 
     0.633
AKJ07642.1
Hypothetical protein.
  
     0.628
AKJ02715.1
TolA protein.
 
     0.615
AKJ05726.1
Hypothetical protein.
  
     0.612
AKJ05881.1
Hypothetical protein.
  
     0.607
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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