| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKJ01732.1 | rph | AA314_03358 | AA314_03357 | Nucleoside 5-triphosphatase RdgB; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.989 |
| AKJ04584.1 | AKJ07043.1 | AA314_06210 | AA314_08669 | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | Ribonuclease D. | 0.891 |
| AKJ04584.1 | rnr | AA314_06210 | AA314_06196 | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | 3'-to-5' exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.923 |
| AKJ04584.1 | rph | AA314_06210 | AA314_03357 | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.888 |
| AKJ04584.1 | rpsD | AA314_06210 | AA314_04756 | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.721 |
| AKJ04584.1 | rpsE | AA314_06210 | AA314_04745 | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.611 |
| AKJ04584.1 | rpsK | AA314_06210 | AA314_04755 | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | SSU ribosomal protein S11p; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.744 |
| AKJ04584.1 | rpsL | AA314_06210 | AA314_04723 | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | SSU ribosomal protein S12p; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.730 |
| AKJ07043.1 | AKJ04584.1 | AA314_08669 | AA314_06210 | Ribonuclease D. | 3'-to-5' exoribonuclease RNase R; Belongs to the RNR ribonuclease family. | 0.891 |
| AKJ07043.1 | rnpA | AA314_08669 | AA314_00454 | Ribonuclease D. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.586 |
| AKJ07043.1 | rnr | AA314_08669 | AA314_06196 | Ribonuclease D. | 3'-to-5' exoribonuclease RNase R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.891 |
| AKJ07043.1 | rph | AA314_08669 | AA314_03357 | Ribonuclease D. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.940 |
| AKJ07043.1 | rpsD | AA314_08669 | AA314_04756 | Ribonuclease D. | SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.873 |
| AKJ07043.1 | rpsE | AA314_08669 | AA314_04745 | Ribonuclease D. | SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.539 |
| AKJ07043.1 | rpsK | AA314_08669 | AA314_04755 | Ribonuclease D. | SSU ribosomal protein S11p; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.849 |
| AKJ07043.1 | rpsL | AA314_08669 | AA314_04723 | Ribonuclease D. | SSU ribosomal protein S12p; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.763 |
| dnaG | rph | AA314_03572 | AA314_03357 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.776 |
| dnaG | rpsD | AA314_03572 | AA314_04756 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.422 |
| dnaG | rpsE | AA314_03572 | AA314_04745 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.702 |
| dnaG | rpsK | AA314_03572 | AA314_04755 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | SSU ribosomal protein S11p; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.726 |
