STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01750.1Xaa-Pro aminopeptidase. (509 aa)    
Predicted Functional Partners:
AKJ03556.1
Valyl-tRNA synthetase.
 
   
 0.610
AKJ01749.1
TPR repeat protein.
       0.578
AKJ01751.1
Hypothetical protein.
       0.521
AKI99149.1
Chromosome segregation ATPase.
  
    0.511
AKJ03886.1
Inosine-5'-monophosphate dehydrogenase.
 
 
   0.475
AKJ02746.1
Helicase.
 
     0.469
AKJ08318.1
3'-to-5' oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.
 
     0.446
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 
 0.442
AKJ05458.1
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 
 
 
 0.405
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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