STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01796.1Collagenase. (213 aa)    
Predicted Functional Partners:
AKJ01797.1
Hypothetical protein.
       0.645
AKJ03902.1
Hypothetical protein.
  
     0.537
AKJ05153.1
Putative lipoprotein.
  
     0.473
AKJ01795.1
Putative fibrocystin L.
       0.471
AKJ04011.1
Hypothetical protein.
  
     0.451
AKJ04299.1
TPR domain protein, putative component of TonB system.
  
     0.431
AKJ05323.1
Polyhydroxyalkanoic acid synthase.
  
     0.413
AKJ05033.1
AglU.
  
     0.408
AKJ02904.1
Hypothetical protein.
  
     0.407
AKJ04428.1
Hypothetical protein.
 
     0.407
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.