STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01834.1Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. (462 aa)    
Predicted Functional Partners:
AKJ01833.1
TPR repeat-containing protein.
 
     0.907
AKJ05111.1
WD40 repeat protein.
 
     0.665
AKJ05294.1
High-affnity carbon uptake protein Hat/HatR.
 
  
 0.623
AKJ03219.1
Hypothetical protein.
  
     0.562
AKJ04072.1
Hypothetical protein.
  
     0.543
AKI98917.1
Serine/threonine kinase.
 
     0.506
AKJ07722.1
Hypothetical protein.
 
   
 0.497
AKI98380.1
High-affnity carbon uptake protein Hat/HatR.
  
     0.491
AKJ08482.1
High-affnity carbon uptake protein Hat/HatR.
  
     0.491
AKI98867.1
Hypothetical protein.
  
     0.490
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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