Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ01844.1Chemotaxis protein methyltransferase CheR. (702 aa)    
Predicted Functional Partners:
AKJ02951.1
PAS/PAC domain protein.
 
 
0.772
AKJ02023.1
PAS/PAC domain protein.
 
 
0.741
AKJ02816.1
Sensor histidine kinase/response rgulator.
 
 
 
 0.730
AKJ01840.1
Sensor histidine kinase.
  
 
   0.707
AKJ08451.1
DNA-binding response regulator KdpE.
  
   0.694
AKJ05961.1
Putative SigmaB asociated two-component system sensor protein.
 
 
0.676
AKI99695.1
Putative SigmaB asociated two-component system sensor protein.
 
 
0.663
AKJ08317.1
Response regulator.
  
   0.659
AKI99496.1
PAS/PAC domain protein.
 
 
0.655
AKJ02542.1
Chemotaxis regulator.
  
 
   0.653
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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