STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01934.1ABC transporter, ATP-binding protein. (325 aa)    
Predicted Functional Partners:
AKJ01935.1
ABC transporter, permease protein.
  
 0.963
ctaB
Heme O synthase, protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.780
AKJ07760.1
Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family.
      0.706
AKI99886.1
Hypothetical protein.
  
 0.539
AKJ01931.1
TPR domain protein, putative component of TonB system.
       0.510
AKJ01936.1
Copper binding protein, plastocyanin/azurin family.
       0.501
AKI98409.1
Membrane protein.
  
 
 0.474
AKI99972.1
Membrane protein.
  
 
 0.474
AKJ02488.1
Membrane protein.
  
 
 0.474
AKJ04774.1
Pectin lyase like protein.
  
 
 0.450
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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