Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01936.1Copper binding protein, plastocyanin/azurin family. (275 aa)    
Predicted Functional Partners:
alc
Allantoicase; Belongs to the allantoicase family.
  
    0.596
AKJ01935.1
ABC transporter, permease protein.
 
     0.569
AKJ08197.1
Hypothetical protein.
  
     0.540
AKJ08302.1
Hypothetical protein.
  
     0.535
AKJ08216.1
Hypothetical protein.
  
     0.534
ctaB
Heme O synthase, protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.525
AKJ05985.1
Tat.
  
     0.525
AKJ03171.1
Ureidoglycolate hydrolase.
  
    0.512
AKJ01934.1
ABC transporter, ATP-binding protein.
       0.501
AKJ07578.1
tolB protein precursor protein.
  
     0.481
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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