Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01942.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
AKJ04885.1
Hypothetical protein.
  
     0.634
AKJ07119.1
Beta-carotene ketolase.
  
     0.553
AKI98783.1
Hypothetical protein.
  
  
 0.540
AKJ05852.1
Hypothetical protein.
  
     0.507
AKJ01941.1
Cold shock protein CspE.
       0.472
AKJ05793.1
Hypothetical protein.
  
     0.467
AKJ00128.1
Hypothetical protein.
  
     0.462
AKJ04498.1
Hypothetical protein.
 
     0.456
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
   
    0.454
AKJ05289.1
Deoxyhypusine synthase.
  
     0.418
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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