Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKJ01954.1Hypothetical protein. (470 aa)    
Predicted Functional Partners:
truD
tRNA pseudouridine 13 synthase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
     0.815
AKJ01953.1
Periplasmic thiol:disulfide interchange protein DsbA.
       0.780
AKJ00756.1
DnaJ-class molecular chaperone CbpA.
  
     0.772
AKJ02848.1
DNA-binding response regulator KdpE.
  
     0.772
AKJ01583.1
Gliding motility protein MglA.
  
     0.768
AKJ02600.1
Cell division protein FtsK.
  
   
 0.759
AKJ06647.1
Hypothetical protein.
  
     0.755
AKJ00687.1
Cell division protein FtsK.
  
   
 0.754
AKJ06613.1
Hypothetical protein.
  
     0.753
AKJ01956.1
Putative lipoprotein.
       0.752
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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