STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ01970.1RNA polymerase sigma-70 factor, ECF subfamily. (180 aa)    
Predicted Functional Partners:
AKJ02365.1
Putative Ig-like domain protein.
  
     0.596
AKI98536.1
Primosomal protein N.
  
     0.592
AKJ00068.1
Molybdate metabolism regulator.
  
 
   0.577
AKI99978.1
Trans-aconitate 2-methyltransferase.
  
     0.565
AKJ01971.1
Hypothetical protein.
       0.542
AKJ00021.1
Fatty acid desaturase family protein.
  
     0.537
AKI98537.1
Primosomal protein N.
  
     0.529
AKJ04056.1
Molybdate metabolism regulator.
  
     0.470
AKI99034.1
Fatty acid desaturase family protein.
  
     0.453
AKJ06761.1
Molybdate metabolism regulator.
  
     0.451
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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